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SRX18895382: GSM6910261: Mut pga rep3; Actinobacillus pleuropneumoniae serovar 1 str. 4074; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 62.5M spots, 18.7G bases, 5.8Gb downloads

External Id: GSM6910261_r1
Submitted by: Huazhong Agricultural University
Study: Comparative transcriptome analysis reveals metabolic differences between planktonic and biofilm of Actinobacillus pleuropneumoniae.
show Abstracthide Abstract
To reveal the transcriptional profiles of Actinobacillus pleuropneumoniae under biofilm and planktonic growth, we established a biofilm-forming culture method and constructed a mutant strain ?pga with defect in biofilm formation. Wild-type and ?pga mutant strains of Actinobacillus pleuropneumoniae strain 4074 were cultured in bottles with shaking for planktonic (WT_PK) and in microplates in static status for biofilm (WT_BF, ?pga), respectively. The bacteria in logarithmic growth period of different culture groups were collected for RNA seq. Overall design: The planktonic bacteria were obtained by culturing bacteria in bottles with shaking, and the biofilm were cultured in microplates in static status. Substances adhered to the bottom of the microplates were obtained as the biofilm layer or adhesion layer.
Sample: Mut pga rep3
SAMN32512755 • SRS16324471 • All experiments • All runs
Library:
Name: GSM6910261
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from strains WT and Δpga cultured to mid-log phase supplemented with shaking or in static status. Total RNA was extracted using Trizol lysis according to the protocol recommended by the manufacturer (Total RNA Extraction Kit, Tianmo Biotech, Beijing, China), with three replicates per condition group. Illumina PE RNA libraries for RNA-seq were prepared using IlluminaTruSeq Stranded mRNA LT Sample Prep Kit following manufacturer's protocols.
Runs: 1 run, 62.5M spots, 18.7G bases, 5.8Gb
Run# of Spots# of BasesSizePublished
SRR2293803862,457,96218.7G5.8Gb2023-05-31

ID:
26002386

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